US-SOMO Publications page
- Rocco, M., Brookes, E. & Byron, O. US-SOMO: Methods for Construction and Hydration of Macromolecular Hydrodynamic Models. In: Encyclopedia of Biophysics, Roberts, G. & Watts, A., European Biophysical Societies (eds). Springer, Berlin, Heidelberg (2021). Doi: 10.1007/978-3-642-35943-9_292-1 Cited by
- Brookes, E. and Rocco, M., 2018. Recent advances in the UltraScan SOlution MOdeller (US-SOMO) hydrodynamic and small-angle scattering data analysis and simulation suite. European Biophysics Journal, 47(7), pp.855-864. Doi: 10.1007/s00249-018-1296-0 Cited by
- Brookes, E., Vachette, P., Rocco, M. and Pérez, J., 2016. US-SOMO HPLC-SAXS module: dealing with capillary fouling and extraction of pure component patterns from poorly resolved SEC-SAXS data. Journal of applied crystallography, 49(5), pp.1827-1841. Doi: 10.1107/S1600576716011201 Cited by
- Brookes, E. and Rocco, M., 2016. Calculation of hydrodynamic parameters: US-SOMO. In Analytical Ultracentrifugation (pp. 169-193). Springer, Tokyo. Doi: 10.1007/978-4-431-55985-6_10 Cited by
- Rocco, M. & Byron, O. Hydrodynamic modeling and its application in AUC. Methods Enzymol. 562, 81-108 (2015). Doi: 10.1016/bs.mie.2015.04.010 Cited by
- Rocco, M. & Byron, O. Computing translational diffusion and sedimentation coefficients: an evaluation of experimental data and programs. Eur. Biophys. J. 44, 417-431 (2015). Erratum in: Eur. Biophys. J. 44, 433-436 (2015). Doi: 10.1007/s00249-015-1042-9 Cited by
- Rocco, M. & Brookes, E. Dynamical aspects of biomacromolecular multi-resolution modelling using the UltraScan Solution Modeler (US–SOMO) suite. In: The Future of Dynamic Structural Science. NATO Science for Peace and Security Series A: Chemistry and Biology. Howard, J., Sparkes, H., Raithby, P. & Churakov, A. (eds). Springer, Dordrecht, pp 189–199 (2014). Doi: 10.1007/978-94-017-8550-1_13 Cited by
- Brookes, E., Pérez, J., Cardinali, B., Profumo, A., Vachette, P. and Rocco, M., 2013. Fibrinogen species as resolved by HPLC-SAXS data processing within the UltraScan Solution Modeler (US-SOMO) enhanced SAS module. Journal of applied crystallography, 46(6), pp.1823-1833. Doi: 10.1107/S0021889813027751 Cited by
- Brookes, E., Singh, R., Pierce, M., Marru, S., Demeler, B. and Rocco, M., 2013, July. US-SOMO cluster methods: year one perspective. In Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery (pp. 1-2). Doi: 10.1145/2484762.2484815 Cited by
- Brookes, E., Singh, R., Pierce, M., Marru, S., Demeler, B. and Rocco, M., 2012, July. Ultrascan solution modeler: integrated hydrodynamic parameter and small angle scattering computation and fitting tools. In Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond (pp. 1-8). Doi: 10.1145/2335755.2335839 Cited by
- Brookes, E., Demeler, B. and Rocco, M., 2010. Developments in the US‐SOMO bead modeling suite: new features in the direct residue‐to‐bead method, improved grid routines, and influence of accessible surface area screening. Macromolecular bioscience, 10(7), pp.746-753. Doi: 10.1002/mabi.200900474 Cited by
- Brookes, E., Demeler, B., Rosano, C. and Rocco, M., 2010. The implementation of SOMO (SOlution MOdeller) in the UltraScan analytical ultracentrifugation data analysis suite: enhanced capabilities allow the reliable hydrodynamic modeling of virtually any kind of biomacromolecule. European Biophysics Journal, 39(3), pp.423-435. Doi: 10.1007/s00249-009-0418-0 Cited by
- Rai, N., Nöllmann, M., Spotorno, B., Tassara, G., Byron, O. and Rocco, M., 2005. SOMO (SOlution MOdeler): differences between X-ray-and NMR-derived bead models suggest a role for side chain flexibility in protein hydrodynamics. Structure, 13(5), pp.723-734. Doi: 10.1016/j.str.2005.02.012 Cited by
If you have any questions, please feel free to contact us directly.
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Emre Brookes, Ph.D. |
Mattia Rocco, Ph.D. |